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Tar Archive: /hpux/Maths/Misc/hmmer-2.1.2/hmmer-2.1.2-src-11.00.tar.gz

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drwxr-xr-x           0 Dec  9 23:11 1998 hmmer-2.1.2/Man/
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drwxr-xr-x           0 Dec  8 11:22 1999 hmmer-2.1.2/src/
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drwxr-xr-x           0 Dec 11 20:27 1998 hmmer-2.1.2/Userguide/
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-r--r--r--        1523 Dec  9 23:11 1998 hmmer-2.1.2/INSTALL
drwxr-xr-x           0 Dec  8 11:20 1999 hmmer-2.1.2/Shiva/
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