Tar Archive: /hpux/Maths/Misc/hmmer-2.1.2/hmmer-2.1.2-src-11.00.tar.gz
Permissions Size Date Name
drwxr-xr-x 0 Dec 8 11:43 1999 hmmer-2.1.2/
drwxr-xr-x 0 Dec 9 23:11 1998 hmmer-2.1.2/Man/
-rw-r--r-- 2908 Dec 9 23:11 1998 hmmer-2.1.2/Man/hmmalign.man
-rw-r--r-- 2642 Dec 9 23:11 1998 hmmer-2.1.2/Man/alistat.man
-rw-r--r-- 4263 Dec 9 23:11 1998 hmmer-2.1.2/Man/sreformat.man
-rw-r--r-- 6427 Dec 9 23:11 1998 hmmer-2.1.2/Man/hmmpfam.man
-rw-r--r-- 4260 Dec 9 23:11 1998 hmmer-2.1.2/Man/hmmer.man
-rw-r--r-- 1478 Dec 9 23:11 1998 hmmer-2.1.2/Man/hmmfetch.man
-rw-r--r-- 5959 Dec 9 23:11 1998 hmmer-2.1.2/Man/hmmsearch.man
-rw-r--r-- 1247 Dec 9 23:11 1998 hmmer-2.1.2/Man/hmmindex.man
-rw-r--r-- 10882 Dec 9 23:11 1998 hmmer-2.1.2/Man/hmmbuild.man
-rw-r--r-- 2508 Dec 9 23:11 1998 hmmer-2.1.2/Man/hmmemit.man
-rw-r--r-- 1573 Dec 9 23:11 1998 hmmer-2.1.2/Man/seqstat.man
-rw-r--r-- 3529 Dec 9 23:11 1998 hmmer-2.1.2/Man/hmmcalibrate.man
-rw-r--r-- 2128 Dec 9 23:11 1998 hmmer-2.1.2/Man/hmmconvert.man
-rw-r--r-- 3986 Dec 9 23:11 1998 hmmer-2.1.2/Man/getseq.man
drwxr-xr-x 0 Dec 8 11:22 1999 hmmer-2.1.2/src/
-r--r--r-- 39320 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmpfam.c
-r--r--r-- 14975 Dec 9 23:11 1998 hmmer-2.1.2/src/aligneval.c
-r--r--r-- 4904 Dec 9 23:11 1998 hmmer-2.1.2/src/iupac.c
-r--r--r-- 3396 Dec 9 23:11 1998 hmmer-2.1.2/src/types.c
-r--r--r-- 12884 Dec 9 23:11 1998 hmmer-2.1.2/src/pvm.c
-r--r--r-- 29826 Dec 9 23:11 1998 hmmer-2.1.2/src/hsregex.c
-r--r--r-- 36023 Dec 9 23:11 1998 hmmer-2.1.2/src/trace.c
-r--r--r-- 2542 Dec 9 23:11 1998 hmmer-2.1.2/src/stack.c
-r--r--r-- 42309 Dec 9 23:11 1998 hmmer-2.1.2/src/sqio.c
-r--r--r-- 35926 Dec 9 23:11 1998 hmmer-2.1.2/src/plan7.c
-r--r--r-- 3596 Dec 9 23:11 1998 hmmer-2.1.2/src/plan9.c
-r--r--r-- 7299 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmindex.c
-r--r--r-- 3609 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmfetch.c
-r--r--r-- 6273 Dec 9 23:11 1998 hmmer-2.1.2/src/Makefile.in
-r--r--r-- 8974 Dec 9 23:11 1998 hmmer-2.1.2/src/debug.c
-r--r--r-- 17670 Dec 9 23:11 1998 hmmer-2.1.2/src/cluster.c
-r--r--r-- 7105 Dec 9 23:11 1998 hmmer-2.1.2/src/masks.c
-r--r--r-- 9103 Dec 9 23:11 1998 hmmer-2.1.2/src/sre_string.c
-r--r--r-- 20844 Dec 9 23:11 1998 hmmer-2.1.2/src/structs.h
-r--r--r-- 72402 Dec 9 23:11 1998 hmmer-2.1.2/src/core_algorithms.c
-r--r--r-- 5841 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmcalibrate-pvm.c
-r--r--r-- 20033 Dec 9 23:11 1998 hmmer-2.1.2/src/squid.h
-r--r--r-- 2312 Dec 9 23:11 1998 hmmer-2.1.2/src/sqerror.c
-r--r--r-- 9355 Dec 9 23:11 1998 hmmer-2.1.2/src/emulation.c
-r--r--r-- 3196 Dec 9 23:11 1998 hmmer-2.1.2/src/threads.c
-r--r--r-- 2283 Dec 9 23:11 1998 hmmer-2.1.2/src/config.h
-r--r--r-- 6651 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmpfam-pvm.c
-r--r--r-- 6717 Dec 9 23:11 1998 hmmer-2.1.2/src/alistat_main.c
-r--r--r-- 909 Dec 9 23:11 1998 hmmer-2.1.2/src/globals.h
-r--r--r-- 19339 Dec 9 23:11 1998 hmmer-2.1.2/src/weight.c
-r--r--r-- 7956 Dec 9 23:11 1998 hmmer-2.1.2/src/gsi.c
-r--r--r-- 2514 Dec 9 23:11 1998 hmmer-2.1.2/src/translate.c
-r--r--r-- 9001 Dec 9 23:11 1998 hmmer-2.1.2/src/mathsupport.c
-r--r--r-- 21216 Dec 9 23:11 1998 hmmer-2.1.2/src/alignio.c
-r--r--r-- 1385 Dec 9 23:11 1998 hmmer-2.1.2/src/revcomp.c
-r--r--r-- 18582 Dec 9 23:11 1998 hmmer-2.1.2/src/gnuregex.h
-r--r--r-- 6042 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmsearch-pvm.c
-r--r--r-- 5513 Dec 9 23:11 1998 hmmer-2.1.2/src/dayhoff.c
-r--r--r-- 15216 Dec 9 23:11 1998 hmmer-2.1.2/src/interleaved.c
-r--r--r-- 6567 Dec 9 23:11 1998 hmmer-2.1.2/src/file.c
-r--r--r-- 21004 Dec 9 23:11 1998 hmmer-2.1.2/src/prior.c
-r--r--r-- 3142 Dec 9 23:11 1998 hmmer-2.1.2/src/misc.c
-r--r--r-- 10352 Dec 9 23:11 1998 hmmer-2.1.2/src/sqfuncs.h
-r--r--r-- 31232 Dec 9 23:11 1998 hmmer-2.1.2/src/modelmakers.c
-r--r--r-- 28936 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmcalibrate.c
-r--r--r-- 9052 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmemit.c
-r--r--r-- 7711 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmconvert.c
-r--r--r-- 12205 Dec 9 23:11 1998 hmmer-2.1.2/src/alphabet.c
-r--r--r-- 42532 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmsearch.c
-r--r--r-- 25358 Dec 9 23:11 1998 hmmer-2.1.2/src/selex.c
-r--r--r-- 7957 Dec 9 23:11 1998 hmmer-2.1.2/src/sreformat_main.c
-r--r--r-- 59329 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmio.c
-r--r--r-- 14414 Dec 9 23:11 1998 hmmer-2.1.2/src/emit.c
-r--r--r-- 3802 Dec 9 23:11 1998 hmmer-2.1.2/src/msf.c
-r--r--r-- 42393 Dec 9 23:11 1998 hmmer-2.1.2/src/histogram.c
-r--r--r-- 4178 Dec 9 23:11 1998 hmmer-2.1.2/src/seqstat_main.c
-r--r--r-- 11683 Dec 9 23:11 1998 hmmer-2.1.2/src/tophits.c
-r--r--r-- 1082 Dec 9 23:11 1998 hmmer-2.1.2/src/version.h
-r--r--r-- 18928 Dec 9 23:11 1998 hmmer-2.1.2/src/sre_math.c
-r--r--r-- 13801 Dec 9 23:11 1998 hmmer-2.1.2/src/funcs.h
-r--r--r-- 39457 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmbuild.c
-r--r--r-- 12635 Dec 9 23:11 1998 hmmer-2.1.2/src/hmmalign.c
-r--r--r-- 893 Dec 9 23:11 1998 hmmer-2.1.2/src/sre_ctype.c
-r--r--r-- 14792 Dec 9 23:11 1998 hmmer-2.1.2/src/getseq_main.c
-r--r--r-- 8279 Dec 9 23:11 1998 hmmer-2.1.2/src/getopt.c
-rw-r--r-- 6313 Dec 8 11:20 1999 hmmer-2.1.2/src/Makefile
-rw-r--r-- 1737 Dec 9 23:11 1998 hmmer-2.1.2/COPYING
-rw-r--r-- 12168 Dec 8 11:09 1999 hmmer-2.1.2/Makefile.in
drwxr-xr-x 0 Dec 11 20:27 1998 hmmer-2.1.2/Userguide/
-rw-r--r-- 1570515 Dec 11 20:27 1998 hmmer-2.1.2/Userguide/Userguide.pdf
-rw-r--r-- 881745 Dec 11 20:27 1998 hmmer-2.1.2/Userguide/hmmer-html.tar.Z
-rw-r--r-- 750133 Dec 11 20:27 1998 hmmer-2.1.2/Userguide/Userguide.ps
-r--r--r-- 17982 Dec 9 23:11 1998 hmmer-2.1.2/LICENSE
-r--r--r-- 1523 Dec 9 23:11 1998 hmmer-2.1.2/INSTALL
drwxr-xr-x 0 Dec 8 11:20 1999 hmmer-2.1.2/Shiva/
-r--r--r-- 5138 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/tophits_test.c
-rw-r--r-- 2492 Dec 8 11:09 1999 hmmer-2.1.2/Shiva/Makefile.in
-r--r--r-- 168 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/Optiontests.nslx
-r--r--r-- 6128 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/parsingviterbi_test.c
-r--r--r-- 16930 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/fn3-bin
-r--r--r-- 31899 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/fn3.hmm
-r--r--r-- 112 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/trace_test.slx
-r--r--r-- 514 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/trace_test.seq
-r--r--r-- 4313 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/trace_test.hmm
-r--r--r-- 2742 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/README
-r--r--r-- 16930 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/fn3-bin-swap
-r--r--r-- 9222 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/alignalign_test.c
-r--r--r-- 5772 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/weeviterbi_test.c
-r--r--r-- 27349 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/titin.fa
-r--r--r-- 10275 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/evd_test.c
-r--r--r-- 484 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/Exercises.sh
-r--r--r-- 4544 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/masks_test.c
-r--r--r-- 5415 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/trace_test.c
-r--r--r-- 297 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/Optiontests.slx
-r--r--r-- 2122 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/Optiontests.pam
-r--r--r-- 126 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/Optiontests.nfa
-r--r--r-- 5533 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/viterbi_exercise.c
-r--r--r-- 27073 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/weeviterbi_test.hmm
-r--r--r-- 535 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/weeviterbi_test.seq
-r--r--r-- 4773 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/Optiontests.pl
-r--r--r-- 232 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/Optiontests.fa
-r--r--r-- 20710 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/fn3.seed
-r--r--r-- 2501 Dec 9 23:11 1998 hmmer-2.1.2/Shiva/Makefile.in.cln
-rw-r--r-- 2544 Dec 8 11:20 1999 hmmer-2.1.2/Shiva/Makefile
drwxr-xr-x 0 Dec 9 23:11 1998 hmmer-2.1.2/Demos/
-r--r--r-- 418 Dec 9 23:11 1998 hmmer-2.1.2/Demos/amino.null
-r--r--r-- 195 Dec 9 23:11 1998 hmmer-2.1.2/Demos/nucleic.null
-r--r--r-- 20710 Dec 9 23:11 1998 hmmer-2.1.2/Demos/fn3.slx
-r--r--r-- 101046 Dec 9 23:11 1998 hmmer-2.1.2/Demos/globins630.fa
-r--r--r-- 16211 Dec 9 23:11 1998 hmmer-2.1.2/Demos/globins50.msf
-r--r--r-- 1489 Dec 9 23:11 1998 hmmer-2.1.2/Demos/Artemia.fa
-r--r--r-- 7214 Dec 9 23:11 1998 hmmer-2.1.2/Demos/7LES_DROME
-r--r--r-- 3014 Dec 9 23:11 1998 hmmer-2.1.2/Demos/amino.pri
-r--r--r-- 46546 Dec 9 23:11 1998 hmmer-2.1.2/Demos/pkinase.slx
-r--r--r-- 27495 Dec 9 23:11 1998 hmmer-2.1.2/Demos/rrm.hmm
-r--r--r-- 10192 Dec 9 23:11 1998 hmmer-2.1.2/Demos/rrm.slx
-r--r--r-- 745 Dec 9 23:11 1998 hmmer-2.1.2/Demos/nucleic.pri
-r--r--r-- 3965 Dec 9 23:11 1998 hmmer-2.1.2/Demos/RU1A_HUMAN
-r--r--r-- 2199 Dec 9 23:11 1998 hmmer-2.1.2/00README
-rw-r--r-- 3065 Dec 9 23:11 1998 hmmer-2.1.2/NOTES
-rwxr-xr-x 43528 Dec 8 11:41 1999 hmmer-2.1.2/configure
drwxr-xr-x 0 Dec 7 16:29 1999 hmmer-2.1.2/debian/
-rw-r--r-- 451 Dec 7 16:27 1999 hmmer-2.1.2/debian/control
-rw-r--r-- 157 Dec 7 16:27 1999 hmmer-2.1.2/debian/README.debian
-rw-r--r-- 509 Dec 7 16:29 1999 hmmer-2.1.2/debian/changelog
-rwxr-xr-x 2433 Dec 7 16:27 1999 hmmer-2.1.2/debian/rules
-rw-r--r-- 395 Dec 7 16:27 1999 hmmer-2.1.2/debian/copyright
-rw-r--r-- 172 Dec 8 11:42 1999 hmmer-2.1.2/HPUX.Install
-r--r--r-- 12007 Dec 9 23:11 1998 hmmer-2.1.2/Makefile.in.cln
-rwxr-xr-x 43409 Dec 9 23:11 1998 hmmer-2.1.2/configure.cln
-rw-r--r-- 12228 Dec 8 11:20 1999 hmmer-2.1.2/Makefile
-rw-r--r-- 781 Dec 8 11:43 1999 hmmer-2.1.2/README.HPPD